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Cheap Henderson Harbor Hotels

The GillHouse

The GillHouse

2 out of 5
13565 County Rte 123 Henderson Harbor NY
$143 nightly
The price is $159 total per night
$159 total
Dec 23 - Dec 24
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
0.03 mi from city center
With a stay at The GillHouse in Henderson Harbor, you'll be on the beach, just a 1-minute walk from Lake Ontario and 6 minutes by foot from Saiff Charters.
Pet friendly
Parking included
Henderson Harbor Cottage w/ Lake Access!

Henderson Harbor Cottage w/ Lake Access!

3 out of 5
10401 Bayshore Dr Henderson Harbor NY
2.36 mi from city center
With a stay at this cottage in Henderson Harbor, you'll be steps from Lake Ontario and a 5-minute drive from Westcott Beach State Park.
Kitchen
Parking included
Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

2.5 out of 5
21000 NY State Rt 3 Watertown NY
$72 nightly
The price is $80 total per night
$80 total
Jan 8 - Jan 9, 2026
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
14.55 mi from city center
When you stay at Ramada by Wyndham Watertown/Thousand Islands NY in Watertown, you'll be near the airport, within a 15-minute walk of Salmon Run Mall and Regal Salmon Run.
Pool
Breakfast included
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

2.5 out of 5
1290 Arsenal St Watertown NY
$95 nightly
The price is $105 total per night
$105 total
Dec 19 - Dec 20
Total with taxes and fees
Free Cancellation
14.92 mi from city center
With a stay at Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG in Watertown, you'll be within a 15-minute drive of Fort Drum and Salmon Run Mall.
Pool
Breakfast included
Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands

2.5 out of 5
110 Commerce Park Drive Watertown NY
$85 nightly
The price is $94 total per night
$94 total
Jan 4 - Jan 5, 2026
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
15.18 mi from city center
In the heart of Watertown, Comfort Inn & Suites Watertown - 1000 Islands is within a 5-minute drive of Salmon Run Mall and Jefferson Community College.
Pool
Breakfast included
Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum

2.5 out of 5
8000 Virginia Smith Drive Calcium NY
$55 nightly
The price is $61 total per night
$61 total
Jan 4 - Jan 5, 2026
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
21.38 mi from city center
Located in Calcium, Quality Inn & Suites Watertown Fort Drum is a 3-minute drive from Fort Drum and 7 minutes from Evans Mills Speedway.
Breakfast included
Parking included
Hampton Inn Watertown

Hampton Inn Watertown

2.5 out of 5
155 Commerce Park Dr Watertown NY
$95 nightly
The price is $106 total per night
$106 total
Dec 22 - Dec 23
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
15.18 mi from city center
With a stay at Hampton Inn Watertown in Watertown, you'll be within a 15-minute drive of Fort Drum and Kostyk Field.
Pool
Breakfast included
Hilton Garden Inn Watertown/Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands

3 out of 5
1290 Arsenal Street Watertown NY
$113 nightly
The price is $125 total per night
$125 total
Jan 9 - Jan 10, 2026
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
14.83 mi from city center
With a stay at Hilton Garden Inn Watertown/Thousand Islands in Watertown, you'll be within a 5-minute drive of Salmon Run Mall and Regal Salmon Run.
Pool
Hot Tub
Best Western Watertown Fort Drum

Best Western Watertown Fort Drum

2.5 out of 5
300 Washington St Watertown NY
16.2 mi from city center
With a stay at Hotel Watertown, you'll be centrally located in Watertown, within a 15-minute drive of Fort Drum and Jefferson County Historical Society.
Breakfast included
Pet friendly
Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

2 out of 5
25940 US Route 11 Calcium NY
$61 nightly
The price is $68 total per night
$68 total
Jan 11 - Jan 12, 2026
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
21.88 mi from city center
Located in Calcium, Days Inn by Wyndham Watertown Fort Drum is in the suburbs, a 2-minute drive from Fort Drum and 6 minutes from Evans Mills Speedway.
Breakfast included
Parking included
Beautiful Lake House w/ Private Beach

Beautiful Lake House w/ Private Beach

Three Mile Bay NY
10.77 mi from city center
Located in Three Mile Bay, this vacation home is on the waterfront, a 1-minute drive from Lake Ontario and 7 minutes from Long Point State Park - Thousand Islands.
Kitchen
Washer
Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands

2.5 out of 5
250 Commerce Park Dr Watertown NY
$121 nightly
The price is $134 total per night
$134 total
Dec 16 - Dec 17
Total with taxes and fees
Free Cancellation
Reserve now, pay when you stay
15.28 mi from city center
With a stay at Fairfield Inn & Suites Watertown Thousand Islands in Watertown, you'll be in the suburbs, within a 15-minute drive of Fort Drum and Kostyk Field.
Pool
Breakfast included
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

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Henderson Harbor hotels essential information

Accommodation
190 hotels
Lowest Price
$61
Highest Price
$159
Popular hotels
The GillHouse, Henderson Harbor Cottage w/ Lake Access!, Ramada by Wyndham Watertown/Thousand Islands NY, Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG, Comfort Inn & Suites Watertown - 1000 Islands, Quality Inn & Suites Watertown Fort Drum, Hampton Inn Watertown, Hilton Garden Inn Watertown/Thousand Islands, Best Western Watertown Fort Drum, Days Inn by Wyndham Watertown Fort Drum, Beautiful Lake House w/ Private Beach, Fairfield Inn & Suites Watertown Thousand Islands

Most Recent Henderson Harbor Hotel Reviews

Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

5 out of 5
Posted 3 days ago
CheapTickets Verified Review
"Perfect! Excellent location, room, check in!!🙂"
A verified traveler stayed at Days Inn by Wyndham Watertown Fort Drum
Days Inn by Wyndham Watertown Fort Drum